pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
I ran the GrnBoost2 algorithm on my bulk transcriptomics data and now want to predict regulon using cisTarget.
My code raised "could not convert string to float: " error.
I ran the GrnBoost2 algorithm on my bulk transcriptomics data and now want to predict regulon using cisTarget. My code raised "could not convert string to float: " error.
ADJACENCIES_FNAME = "../input/gene-regulatory-network/inferred_network.tsv"
Run pySCENIC:
Traceback: