Open caodudu opened 1 year ago
Hi! I have the same problem and error message. Where you able to solve it? Thanks!
Hi! I have the same problem and error message. Where you able to solve it? Thanks!
Sorry, I did fix it but unfortunately I didn't record the solution. The advise is to utilize your script to test a demo dataset which has worked in others' computer.
Hi,
In the step of ctx, you can try to save the output file as gmt file, but not csv file. I resolved my error in this way. Hope it could help.
when I try the code like this:
I find a file called 'signatures_fname' is required. So what is it? why others try to analyse don't need the file. usage: pyscenic aucell [-h] [-o OUTPUT] [-t] [-w] [--num_workers NUM_WORKERS] [--seed SEED] [--rank_threshold RANK_THRESHOLD] [--auc_threshold AUC_THRESHOLD] [--nes_threshold NES_THRESHOLD] [--cell_id_attribute CELL_ID_ATTRIBUTE] [--gene_attribute GENE_ATTRIBUTE] [--sparse] expression_mtx_fname signatures_fname pyscenic aucell: error: the following arguments are required: signatures_fname