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aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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how to merge loom file of per celltype and to visualize？ #519

Open Jingle0814 opened 10 months ago

Jingle0814 commented 10 months ago

For questions about using SCENIC, please use the Discussions: https://github.com/aertslab/SCENIC/discussions/

Create an issue only to report bugs.

Mote that most errors are due to the input from the user, and therefore should be treated as questions in the Discussions. Please, only report them as bugs if you are quite certain that they are not behaving as expected. Hi, Thanks a lot to your team for developing pyscenic. I have some questions about the result visualization. Due to the large number of cells in my data, I ran pyscenic split by celltype,and get loom file per celltype,how to merge the loom files and visiualize? thanks a lot!