aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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[feature request] modules_from_adjacencies don't support csr matrix #548

Closed Liripo closed 4 months ago

Liripo commented 4 months ago

I saw that modules_from_adjacencies function must convert expressions into pandas, which is not friendly to big data. It can directly support anndata?