[question] Can use `xgboost` or `lightgbm`

aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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[question] Can use `xgboost` or `lightgbm` #550

Open Liripo opened 3 months ago

Liripo commented 3 months ago

The grn step uses sklearn gradient boosting regularization. Can xgboost or lightgbm be used instead? What are the parameters like?

liangyu02 commented 1 month ago

very good