pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
I have some single-cell RNA-seq data, but some of them capture the transcriptome of the whole cell, while others capture the transcriptome within the cell nucleus.
Can single-cell data from both the whole cell level and the nucleus level be simultaneously input into SCENIC for joint analysis?
Hi, thank you for developing such a great tool!
I have some single-cell RNA-seq data, but some of them capture the transcriptome of the whole cell, while others capture the transcriptome within the cell nucleus.
Can single-cell data from both the whole cell level and the nucleus level be simultaneously input into SCENIC for joint analysis?