pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
I am having an issue with the getAUC function;
library(AUCell)
regulonActivity_byCellType <- sapply(cellInfo,
function(Cell) rowMeans(getAUC(auc_mtx_numeric)[,Cell]))
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'rowMeans': unable to find an inherited method for function ‘getAUC’ for signature ‘"matrix"’
ghuls
commented
1 month ago
Hi,
I am having an issue with the getAUC function; library(AUCell) regulonActivity_byCellType <- sapply(cellInfo, function(Cell) rowMeans(getAUC(auc_mtx_numeric)[,Cell]))
Could you someone please help?
Best regards, Aastha