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aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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unable to pull [ERROR] #583

Open yulchen810 opened 1 week ago

yulchen810 commented 1 week ago

[this issue has been resolved]

Hi, I'm trying to run pyscenic in docker desktop(windows), but the first step I failed to pull aertslab/pyscenic:0.11.2 The error shows as below picture. There are some replies about changing the DNS address like 8.8.8.8, but it doesn't work for me. I use the system proxy which works fine when I browsing docker hub. Does anyone know how to resolve this? Thank you a lot.

image

ghuls commented 1 week ago

Can you try: docker pull aertslab/pyscenic:0.12.1 ?

yulchen810 commented 1 week ago

Can you try: docker pull aertslab/pyscenic:0.12.1 ?

I reinstalled the docker desktop and then worked.

yulchen810 commented 1 week ago

By the way, it seems no tutorial about downstrem analysis of the tsv files generated from docker pyscenic.