dimensionality reduction dictionary

aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

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dimensionality reduction dictionary #132

Closed TingTingShao closed 7 months ago

TingTingShao commented 7 months ago

Hi,

Could I please ask, after running run_umap, where to find the dimension reduction dictionary in the cistopic_obj?

If I already have run dimension reduction results from another package, is it possible to use the DR results instead of run_umap in pycistopic again?

Thanks, tingting

TingTingShao commented 7 months ago

Hi,

saw answer from here https://github.com/aertslab/pycisTopic/discussions/86?sort=new

will give a try