aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
Other
58 stars 12 forks source link

find_diff_features #133

Closed TingTingShao closed 7 months ago

TingTingShao commented 7 months ago

Hi,

I have questions regarding find_diff_features. I am not sure how to interpret the contrasts.

I am not sure if I understand it correctly, when the constrasts=None, the comparison will be 1 vs 2, 3 2 vs 1, 3 3 vs 1, 2

If I have three clusters.

Thanks, tingting