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aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
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Installation error #165

Open ghost opened 2 months ago

ghost commented 2 months ago

Hello,

I have been trying to install pycisTopic and seem to be getting an error message as seen below. Additionally, when I try to run the "pycisTopic.version" command. I get an error message that says that this attribute is unavailable. I am unsure if this is related to the installation error or not.

I have attached two text files of the whole output after trying to install and another one with the exact error message that pops up.

I am using python 3.12.4 and I am trying to install this software in the high-performance computing environment.

Thank you in advance and please let me know if any further information is needed.

output of the command.txt error regarding pycisTopic install.txt

Stack7 commented 2 months ago

Very interesting! I have got the same issue! I am installing it inside a conda enviroment with Python 3.11 in a Fedora 40. By chance, do you manage to solve it?

ghost commented 2 months ago

Unfortunately, I have not been able to solve this error yet.

ghost commented 2 months ago

Very interesting! I have got the same issue! I am installing it inside a conda enviroment with Python 3.11 in a Fedora 40. By chance, do you manage to solve it?

Hello, I just wanted to let you know that I was able to bypass this error by downloading the entire SCENIC+ module. In that download, pycisTopic was able to be installed correctly. I hope this can help in solving your problem.

Stack7 commented 2 months ago

Perfect! Thanks!