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aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
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'export_pseudobulk' output difference log #172

Open GGboy-Zzz opened 1 month ago

GGboy-Zzz commented 1 month ago

Hi, I processed a batch of scATACseq data using pycistopic last year, at that time, the export_pseudobulk output in the juypter lab is as follows, image yet, When I was using pycistopic recently, the export_pseudobulk output changed to image Both generated pseudobulk bed files for each cell type. I'm confused about its change, because I dont update it. So, I would like to ask if this output is normal？Thanks for your reply.

ghuls commented 3 weeks ago

The implementation of export_pseudobulk was rewritten to be faster, hence the slightly different logging lines.