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aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
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Installation error #173

Closed juhi-ku closed 1 month ago

juhi-ku commented 2 months ago

I am constantly facing error in installation even though I have updated the python and lda. It still throws an error. Can you please tell me where is the error?

ERROR: Ignored the following versions that require a different python version: 0.5.12 Requires-Python >=3.7,<3.12; 0.5.13 Requires-Python >=3.7,<3.12; 3.0.0 Requires-Python >=3.9,<=3.12 ERROR: Could not find a version that satisfies the requirement lda==3.0.0 (from scenicplus) (from versions: 0.1.0, 0.2.0, 0.2.1rc0, 0.3.0, 0.3.1, 0.3.2, 1.0.0, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.1.0, 2.0.0, 3.0.1, 3.0.2) ERROR: No matching distribution found for lda==3.0.0

Stack7 commented 1 month ago

I solved the issue in 2 steps: the first was: python3.11 -m pip install lda==3.0.0 the second: python3.11 -m pip install . Considering that I am installing SCENIC+ : https://github.com/aertslab/scenicplus in a conda enviroment with python version 3.11 after a git clone of the repo