search

aertslab / pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
Other
58 stars 12 forks source link

If I get a low TSS enrichment, how can I filter it effectively? #188

Closed Melody-cell closed 4 days ago

Melody-cell commented 6 days ago

I got a low TSS enrichment on my data, i wonder how can I make an effective filtering, cause i don't see any filtering steps on this new version of this tutorial: image I wonder if I can filter cells lower than the thresholds, and using cells after filtered to plot a qc plot? Did anyone know how to solve it? Thank you for your consideration.