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aertslab / scATAC-seq_benchmark

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location for fragments files #1

Open eravza opened 1 year ago

eravza commented 1 year ago

Hi, I can't see the fragments files in 1_data_repository/full_fragments like stated below. Can you help me with his please?

For each experiment, the full sequencing data was then aligned to the reference genome. Results are in full_1_vsn_preprocessing. Symlinks to .bam and .fragments.tsv.gz were placed in 1_data_repository/full_bams and 1_data_repository/full_fragments

fderop commented 2 days ago

Hi, sorry for replying so late - but yes, we cannot upload all of this data on GitHub since it would exceed the maximum storage. GitHub is intended for code - you can find the actual data here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE194028