typos in pbmc tutorial

[alexlenail]

1. tutorial reads:

   from scenicplus.scenicplus_class import create_SCENICPLUS_object
   import numpy as np
   scplus_obj = create_SCENICPLUS_object(
   GEX_anndata = adata.raw.to_adata(),
   cisTopic_obj = cistopic_obj,
   menr = menr,
   bc_transform_func = lambda x: f'{x}-10x_pbmc' #function to convert scATAC-seq barcodes to scRNA-seq ones
   )
   scplus_obj.X_EXP = np.array(scplus_obj.X_EXP.todense())
   scplus_obj

   but the comment above is wrong: actually bc_transform_func works the other direction:

   bc_transform_func: func
       A function used to transform gene expression barcode layout to chromatin accessbility layout.
       default: None

2. Tutorial reads:

Here we will use the wrapper function. For more information on the different steps, see the following tutorial: TO BE ADDED.

That "to be added" can probably link to this tutorial now: https://scenicplus.readthedocs.io/en/latest/Scenicplus_step_by_step-RTD.html

[SeppeDeWinter]

Hi @alexlenail

Thank you for you comments!

I'm working on a new tutorial (development branch), I'll take these things into account.

Best,

Seppe