SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Other
178
stars
28
forks
source link
eRegulon difference between two groups in specific cell type #119
I have a processed dataset with 13 cell types and two groups (disease and control). I want to see the regulon difference between the two groups in Fibroblasts.
I wondered if it makes sense to run the SCENIC+ on Fibroblasts and use groups (e.g. disease and control) as the variable for the run_scenicplus() function.
Hi,
First of all, thanks for this excellent software.
I have a processed dataset with 13 cell types and two groups (disease and control). I want to see the regulon difference between the two groups in Fibroblasts.
I wondered if it makes sense to run the SCENIC+ on Fibroblasts and use groups (e.g. disease and control) as the variable for the run_scenicplus() function.
Cheers,
Ian