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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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Is it possible for us to access the results of pbmc tutorial? #147

Open HelloWorldLTY opened 1 year ago

HelloWorldLTY commented 1 year ago

Hi, I wonder if it is possible for us to access the files after processing based on tutorial. I intend to directly use them in my analysis. Thanks a lot.

SeppeDeWinter commented 1 year ago

Hi @HelloWorldLTY

What file would you need? The loom file you can already find at SCope https://scope.aertslab.org/#/scenic-v2/*/welcome

If you need another file, can you please provide me with your e-mail.

Best,

Seppe

HelloWorldLTY commented 1 year ago

Hi, thanks for your reply. I think what I intend to access is a matrix, with genes x tfs. And the identity of this matrix represents the link strength or something else. Thanks a lot.

My email is tianyu.liu@yale.edu.