1xM DataFrame dimension for

aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

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1xM DataFrame dimension for #184

Closed GeneVector5 closed 11 months ago

GeneVector5 commented 11 months ago

Can SCENIC+ handle a 1xM (1 row, M genes) expression_data DataFrame for grnboost2 ?

The following execution does not seem to stop for 1xM DataFrame but it does stop sooner for a NxM expression_data DataFrame

grnboost2(expression_data=revised_expression_matrix_df, tf_names=transcription_factors_lst, verbose=True)