SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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how to install SCENIC+ on LINUX Google Cloud VM #192
I am going through the installation tutorials and would like to know how to install SCENIC+ on a Linux ubunto OS syste; I am working on a virtual machine
I tried installing it but got some errors I do not know how to get around
dave@instance-176:~$ mkdir scenicplus
dave@instance-176:~$ cd scenicplus/
dave@instance-176:~/scenicplus$ conda create --name scenicplus python=3.8
conda: command not found
dave@instance-176:~/scenicplus$ conda activate scenicplus
conda: command not found
dave@instance-176:~/scenicplus$ git clone https://github.com/aertslab/scenicplus
Cloning into 'scenicplus'...
remote: Enumerating objects: 3220, done.
remote: Counting objects: 100% (531/531), done.
remote: Compressing objects: 100% (225/225), done.
remote: Total 3220 (delta 286), reused 428 (delta 218), pack-reused 2689
Receiving objects: 100% (3220/3220), 38.98 MiB | 44.25 MiB/s, done.
Resolving deltas: 100% (1786/1786), done.
dave@instance-176:~/scenicplus$ cd scenicplus
dave@instance-176:~/scenicplus/scenicplus$ pip install -e .
Command 'pip' not found, but can be installed with:
apt install python3-pip
Please ask your administrator.
dave@instance-176:~/scenicplus/scenicplus$
I am going through the installation tutorials and would like to know how to install SCENIC+ on a Linux ubunto OS syste; I am working on a virtual machine
I tried installing it but got some errors I do not know how to get around