SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Step 6/28 : COPY pycisTopic/requirements.txt /tmp/
COPY failed: file not found in build context or excluded by .dockerignore: stat pycisTopic/requirements.txt: file does not exist
Then if I change that line in the Dockerfile to use the requirements.txt file in the root directory of the repo, I get another error:
Step 8/28 : COPY pySCENIC /tmp/pySCENIC
COPY failed: file not found in build context or excluded by .dockerignore: stat pySCENIC: file does not exist
There is no such file or directory anywhere in the repo.
Expected behavior
Docker image builds successfully.
Version (please complete the following information):
N/A
Additional context
It would be great if the Dockerfile worked, because scenicplus has a lot of dependencies which can be difficult to build. This would make it a lot easier to use.
Describe the bug Dockerfile does not build
To Reproduce
cd scenicplusdocker build -t scenicplus .Error output
The first error you see is:
Then if I change that line in the Dockerfile to use the requirements.txt file in the root directory of the repo, I get another error:
There is no such file or directory anywhere in the repo.
Expected behavior
Docker image builds successfully.
Version (please complete the following information):
N/A
Additional context
It would be great if the Dockerfile worked, because scenicplus has a lot of dependencies which can be difficult to build. This would make it a lot easier to use.
Thanks!
@fizwit