SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
I have multiple samples and thus multiple fragments.tsv.gz files. How to use them together to infer the GRN? In the tutorial, it seems only one file is allowed for one GRN.
fragments_dict = {'10x_pbmc': os.path.join(work_dir, 'data/pbmc_granulocyte_sorted_3k_atac_fragments.tsv.gz')}
I have multiple samples and thus multiple fragments.tsv.gz files. How to use them together to infer the GRN? In the tutorial, it seems only one file is allowed for one GRN. fragments_dict = {'10x_pbmc': os.path.join(work_dir, 'data/pbmc_granulocyte_sorted_3k_atac_fragments.tsv.gz')}