Closed ktroule closed 7 months ago
I also find many packages for which I have to remove the version on requirements.txt I'm removing the version of each of failing packages to see if I can install it. Example:
ERROR: Could not find a version that satisfies the requirement scikit-image==0.22.0 (from scenicplus) (from versions: 0.7.2, 0.8.0, 0.8.1, 0.8.2, 0.9.0, 0.9.1, 0.9.3, 0.10.0, 0.10.1, 0.11.2, 0.11.3, 0.12.0, 0.12.1, 0.12.2, 0.12.3, 0.13.0, 0.13.1, 0.14.0, 0.14.1, 0.14.2, 0.14.3, 0.14.5, 0.15.0, 0.16.2, 0.17.1, 0.17.2, 0.18.0, 0.18.1, 0.18.2, 0.18.3, 0.19.0rc0, 0.19.0, 0.19.1, 0.19.2, 0.19.3, 0.20.0.dev0, 0.20.0rc2, 0.20.0rc3, 0.20.0rc4, 0.20.0rc5, 0.20.0rc6, 0.20.0rc7, 0.20.0rc8, 0.20.0, 0.21.0rc0, 0.21.0rc1, 0.21.0)
ERROR: No matching distribution found for scikit-image==0.22.0
Hi @ktroule
Unfortunately I was not able to replicate your issue. I'm using a different Rust version though.
mamba create scenicplus_test python=3.11
mamba activate scenicplus_test
git clone https://github.com/aertslab/scenicplus
cd scenicplus
git checkout development
module load Rust/1.73.0-GCCcore-12.2.0
pip install . --no-cache-dir
Installs everything fine for me.
All the best,
Seppe
Hi @SeppeDeWinter and @ktroule,
I found the exact same error as ktroule when trying to install scenicplus in a cluster. In my case with the rust version: Rust/1.65.0-GCCcore-12.2.0
conda create --name scenicplus python=3.11
conda activate scenicplus
git clone https://github.com/aertslab/scenicplus
cd scenicplus
module load Rust/1.65.0-GCCcore-12.2.0
git checkout development
pip install .
@SeppeDeWinter I suppose this is then related to the specific version of Rust used? I will try to use the same as you show.
best, Irepan
Hi again,
I have managed to install scenicplus. First I installed the same rust version as mentioned by @SeppeDeWinter
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs/ | sh -s -- --default-toolchain=1.73.0
But I ran into another error that seemed to be related with the GCC version used by default
ERROR: Could not build wheels for annoy
So I loaded a newer version of GCC available and tried to install again, and this time it finished without error.
module load GCC/12.2.0
pip install . --no-cache-dir
This last part is also mentioned in here:
best, Irepan
Hi.
Somehow I also managed to install it, not really sure how.
Kind regards.
Describe the bug Hi! Thanks for providing this package and all the documentation. I'm not sure if this falls within the bug category.
I'm trying to install scenicplus on a linux based shared server as follows:
Error output Just showing the last bits of the message.
To me it seems related to big tools/pybigtools installation. I've tried to install these packages independently and a similar error pops. Do you have any hint to solve this?
If I do
cargo 1.75.0-nightly
I get cargo 1.75.0-nightly Thanks for your time and help.