installation instructions fetch outdated lda library for conda 24.4.0 & rocky-linux 8.9

[EmielGeeraerts]

Describe the bug A minor issue installing the LDA library on Rocky Linux 8.9 using the provided install instructions.

It appears that the LDA version on conda-forge is outdated, with the latest version being 2.0.0 and scenic+ requiring 3.0.0

https://anaconda.org/conda-forge/lda/labels

Manually installing lda beforehand fixed the issue:

conda create --name scenicplus python=3.11 -y
conda activate scenicplus
pip install lda #install lda manually because conda forge version is outdated

If the provided install instructions could ensure the appropriate repository is used, that'd be amazing. In the mean time, the above work-around is available.

Error output

error log

``` ... Collecting lazy-loader==0.3 (from scenicplus==1.0a1) Using cached lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB) INFO: pip is looking at multiple versions of scenicplus to determine which version is compatible with other requirements. This could take a while. ERROR: Ignored the following versions that require a different python version: 0.5.12 Requires-Python >=3.7,<3.12; 0.5.13 Requires-Python >=3.7,<3.12; 3.0.0 Requires-Python >=3.9,<=3.12 ERROR: Could not find a version that satisfies the requirement lda==3.0.0 (from scenicplus) (from versions: 0.1.0.dev2.g0925a91, 0.1.0, 0.2.0, 0.2.1rc0, 0.3.0, 0.3.1, 0.3.2, 1.0.0, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.1.0, 2.0.0) ERROR: No matching distribution found for lda==3.0.0 ```

To Reproduce

Commands:

conda create --name scenicplus python=3.11 -y
conda activate scenicplus

git clone https://github.com/aertslab/scenicplus
cd scenicplus
pip install .

Expected behavior A complete and error-less installation by fetching correct library versions from appropriate repositories.

Version (please complete the following information): > scenicplus.version '1.0a1' > python Python 3.12.2 | packaged by conda-forge | (main, Feb 16 2024, 20:50:58) [GCC 12.3.0] on linux > conda --version conda 24.4.0 > cat /etc/os-release NAME="Rocky Linux" VERSION="8.9 (Green Obsidian)" ID="rocky" ID_LIKE="rhel centos fedora" VERSION_ID="8.9" PLATFORM_ID="platform:el8" PRETTY_NAME="Rocky Linux 8.9 (Green Obsidian)" ANSI_COLOR="0;32" LOGO="fedora-logo-icon" CPE_NAME="cpe:/o:rocky:rocky:8:GA" HOME_URL="https://rockylinux.org/" BUG_REPORT_URL="https://bugs.rockylinux.org/" SUPPORT_END="2029-05-31" ROCKY_SUPPORT_PRODUCT="Rocky-Linux-8" ROCKY_SUPPORT_PRODUCT_VERSION="8.9" REDHAT_SUPPORT_PRODUCT="Rocky Linux" REDHAT_SUPPORT_PRODUCT_VERSION="8.9"

[juhi-ku]

Hi, I am facing the similar issue even after installing lda==3.0.0. Can you please let me know what is the issue here? I have also changed my python in the version of python 3.9

ERROR: Ignored the following versions that require a different python version: 0.5.12 Requires-Python >=3.7,<3.12; 0.5.13 Requires-Python >=3.7,<3.12; 3.0.0 Requires-Python >=3.9,<=3.12 ERROR: Could not find a version that satisfies the requirement lda==3.0.0 (from scenicplus) (from versions: 0.1.0, 0.2.0, 0.2.1rc0, 0.3.0, 0.3.1, 0.3.2, 1.0.0, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.1.0, 2.0.0, 3.0.1, 3.0.2) ERROR: No matching distribution found for lda==3.0.0