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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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Original Cells Used for pseudomultiome #423

Open orian116 opened 4 months ago

orian116 commented 4 months ago

hello,

Thank you for this package! Is there a way to extract the original cells for both the RNA and ATAC-seq that were used to make the pseudomultiome and map those to the cells for the output matrices "direct_gene_based_AUC" and "extended_gene_based_AUC" in the scplusmdata.h5mu object? I want to look at the the metadata for these cells

SeppeDeWinter commented 4 months ago

Hi @orian116

No, unfortunately this information is not stored. It might however be a good feature to add though! Thanks for the suggestion.

Best,

Seppe