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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

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.raw #427

Open paupaiz opened 4 months ago

paupaiz commented 4 months ago

# TODO: .raw is deprecated, use layers instead.
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61 | GEX_anndata = GEX_anndata.raw.to_adata() if use_raw_for_GEX_anndata else GEX_anndata

Hi, thank you for the package! this deprecated code isn't letting me run SCENIC+. Would really appreciate it if you could update it please!