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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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A simple little question #428

Open goodstudy28 opened 4 months ago

goodstudy28 commented 4 months ago

Hi, is it mentioned in the website about the code for assessing the quality of region-gene relationships with Hi-C data?Can you tell me which part of its code is in?Thank you very much!!!!!!

SeppeDeWinter commented 4 months ago

Hi @goodstudy28

Does this notebook help: https://github.com/aertslab/scenicplus_analyses/blob/main/Benchmarks/Hi-C_analysis/HiC_processing.ipynb ?

This repo contains the code we used to generate figures for the paper.

All the best,

Seppe