Closed swbujnowski closed 3 months ago
SeppeDeWinter
commented
3 months ago Hi @swbujnowski
Is SCENIC+ still installed correctly though? The "error" you are posting is just a warning that should not cause too many issues.
You can check the install by running:
import scenicplus
scenicplus.__version__
Best,
Seppe
swbujnowski
commented
3 months ago Hi Seppe,
Yes, I can import scenicplus and output its version as you have indicated below. I guess that means that scenicplus is OK to use and I shouldn’t worry about those warnings. Thanks for your feedback.
Thanks, Stan
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Is SCENIC+ still installed correctly though? The "error" you are posting is just a warning that should not cause too many issues.
You can check the install by running:
import scenicplus
scenicplus.version
Best,
Seppe
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SeppeDeWinter
commented
3 months ago Hi @swbujnowski
Yes, I assume the installation is OK. If not, feel free to reopen the issue.
Best of luck with the analysis.
Seppe
Describe the bug A clear and concise description of what the bug is.
To Reproduce $ conda create --name scenicplus python=3.11 -y $ conda activate scenicplus $ git clone https://github.com/aertslab/scenicplus $ cd scenicplus $ pip install .
Error output ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. pyfume 0.3.4 requires numpy==1.24.4, but you have numpy 1.26.4 which is incompatible. pyfume 0.3.4 requires pandas==1.5.3, but you have pandas 1.5.0 which is incompatible. pyfume 0.3.4 requires scipy==1.10.1, but you have scipy 1.12.0 which is incompatible.
Expected behavior Expected behavior is to NOT have any error related to pyfume.
Screenshots If applicable, add screenshots to help explain your problem or show the format of the input data for the command/s.
Version (please complete the following information):
Additional context OS: RHEL 8.7