scenicplus prepare_data prepare_menr error

aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

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scenicplus prepare_data prepare_menr error #470

Open Yiming-Huang-neuron opened 1 week ago

Yiming-Huang-neuron commented 1 week ago

HI, Can you help me how to solve the problems with the "scenic plus prepare_data prepare_menr?"

I try each step to run the code. I try the pipeline in mouse species. I'm getting the following error, here is my code.

code

Yiming-Huang-neuron commented 1 week ago

code3

Yiming-Huang-neuron commented 1 week ago

Here is my error error I have found someone who have the same mistakes，but i have checked the error which do not happen in my data.

Please help me.

All the best

Yiming