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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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plot_rss problem #487

Open GGboy-Zzz opened 1 month ago

GGboy-Zzz commented 1 month ago

I used the old version scenic+ to build eGRN, but I met a problem when exploring eGRN results-plot rss, plot_rss(scplus_obj, 'ACC_celltype.predicted_gene_based', num_columns=4, top_n=10,save = outDir + 'plots/regulon_specificity_scores.pdf') image I found it related with adjustText version, yet I I don't have enough ability to modify it. So I hope you can give me some advices, Thanks for your reply. Best regards!

cjiang310437 commented 1 month ago

You can go to adjust_text function and delete the autoalign parameter. But the labels will be overlapped.