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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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Dataset for 10x pbmc multiome #49

Closed tu4n-p closed 1 year ago

tu4n-p commented 1 year ago

Hi there I was trying to test the 10x pbmc multiome tutorial but got trouble with the datasets below: rankings_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.rankings.v2.feather') scores_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.scores.v2.feather') I found similar ones but not the exact same "hg38_screen_v10_clust.regions_vs_motifs.rankings.feather" and "hg38_screen_v10_clust.regions_vs_motifs.scores.feather". The files seem a bit too big so I'm wondering if there are smaller size files that I could try. Thank you,

SeppeDeWinter commented 1 year ago

Hi

Yes that should be the correct file. Unfortunately these files are indeed quite big by nature, we don't have any smaller files to try.

Best,

Seppe