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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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Plotting a network #495

Open sugiYag opened 3 weeks ago

sugiYag commented 3 weeks ago

hi, i have scplusmdata.h5mu file and I'm conducting downstream analysis

What I want to know is how to find regulon information in each cell type.

but I couldn't find a tutorial on the recent version.

Can you send any related documents or tutorial files?

yojetsharma commented 3 weeks ago

I think what you're looking for are in API part of the tutorials.

sugiYag commented 3 weeks ago

Which function should I use to get regulon information for each cell type?

SeppeDeWinter commented 1 week ago

Hi @sugiYag and @yojetsharma

What I want to know is how to find regulon information in each cell type.

What kind of information are you looking for?

Best,

S