aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Other
186 stars 29 forks source link

کتابخانه scenicplus نصب نمیشه یک ماهه تلاش میکنم حتی در محیط مجازی کوندا نیز نصب نمیشه ارور زیر رو میده لطفا کری کنید بشه کتابخانه رو نصب کرد #507

Open sajadfatahi opened 5 days ago

sajadfatahi commented 5 days ago

Sure! Here’s the translation of your request into English:


The scenicplus library is not installing. I've been trying for a month, and it doesn't install even in a Conda virtual environment. It gives the following error. Please help me to install the library.


If you provide the specific error message you're encountering, I can assist you further in troubleshooting the installation of the scenicplus library.

Collecting pybigtools==0.1.2 (from scenicplus==1.0a1) Using cached pybigtools-0.1.2-cp311-none-win_amd64.whl.metadata (1.3 kB) Collecting pybigwig==0.3.22 (from scenicplus==1.0a1) Using cached pyBigWig-0.3.22.tar.gz (73 kB) Installing build dependencies ... done Getting requirements to build wheel ... error error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> [18 lines of output] Traceback (most recent call last): File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 118, in get_requires_for_build_wheel return hook(config_settings) ^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 334, in get_requires_for_build_wheel return self._get_build_requires(config_settings, requirements=[]) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 304, in _get_build_requires self.run_setup() File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 320, in run_setup exec(code, locals()) File "", line 19, in AttributeError: 'NoneType' object has no attribute 'split' [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

SeppeDeWinter commented 4 days ago

Hi @sajadfatahi

Can you please detail the steps you took to install SCENIC+

All the best,

Seppe

ghuls commented 2 days ago

Use a Linux machine to install scenicplus. pyBigWig (https://pypi.org/project/pyBigWig/#files) does not have Windows wheels available and is unlikely to build on Windows.