aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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Sure! Here’s the translation of your request into English: --- The **scenicplus** library is not installing. I've been trying for a month, and it doesn't install even in a Conda virtual environment. It gives the following error. Please help me to install the library. --- If you provide the specific error message you're encountering, I can assist you further in troubleshooting the installation of the **scenicplus** library. #509

Closed sajadfatahi closed 4 days ago

sajadfatahi commented 5 days ago

Collecting pybigtools==0.1.2 (from scenicplus==1.0a1) Using cached pybigtools-0.1.2-cp311-none-win_amd64.whl.metadata (1.3 kB) Collecting pybigwig==0.3.22 (from scenicplus==1.0a1) Using cached pyBigWig-0.3.22.tar.gz (73 kB) Installing build dependencies ... done Getting requirements to build wheel ... error error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> [18 lines of output] Traceback (most recent call last): File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\anaconda3\envs\scenicplus\Lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 118, in get_requires_for_build_wheel return hook(config_settings) ^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 334, in get_requires_for_build_wheel return self._get_build_requires(config_settings, requirements=[]) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 304, in _get_build_requires self.run_setup() File "C:\Users\vira\AppData\Local\Temp\pip-build-env-4cmxzasa\overlay\Lib\site-packages\setuptools\build_meta.py", line 320, in run_setup exec(code, locals()) File "", line 19, in AttributeError: 'NoneType' object has no attribute 'split' [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

(scenicplus) C:\Users\vira\scenicplus\scenicplus>

SeppeDeWinter commented 4 days ago

Hi @sajadfatahi

Please don't open duplicate issues! https://github.com/aertslab/scenicplus/issues/507

Best,

Seppe