Update requirements + Fix tutorial bug

aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

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Update requirements + Fix tutorial bug #95

Closed dburkhardt closed 1 year ago

dburkhardt commented 1 year ago

@SeppeDeWinter could you please review this? Thank you!

SeppeDeWinter commented 1 year ago

Hi @dburkhardt

Thank you for the PR!

Best,

Seppe

cbravo93 commented 1 year ago

Scanpy was fixed to 1.8.2 because afterwards they introduced a bug in the diffusion map plotting function (https://github.com/scverse/scanpy/issues/2227) . In any case, this would only affect for the GRN velocity plots.