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aezarebski / derp-simulation

Code to simulate phylogenetic trees that can be used to train neural networks
https://aezarebski.github.io/derp/index.html
MIT License
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Includes temporal measurements #15

Closed thomaswilliams23 closed 2 months ago

thomaswilliams23 commented 2 months ago

Allows for temporal measurements to be captured if a flag, "report-temporal-data" is specified as "true" in the json config, and a number of temporal measurements, "num-temp-measurements" is given. In this case, the simulation draws that number of random observation times between the start of the epidemic and the present and at each time reports the time, the rzero, the current prevalence and the cumulative infections to date.

aezarebski commented 2 months ago

Aha, also, we should document the new variables in the config in the config/readme.org file so we have a record of this.