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agemagician / ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Academic Free License v3.0
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Missing `example_seqs.fasta` file in the Colab example #157

Open zt20001126 opened 1 month ago

zt20001126 commented 1 month ago

Steps to reproduce:

  1. Open the Colab example from the README.
  2. Run the provided script.
  3. Observe the FileNotFoundError due to the missing example_seqs.fasta file.

Request: Could you kindly add the example_seqs.fasta file or provide a link to download it? Alternatively, a guide on how to use custom protein sequences directly in the Colab example would also be helpful.

Thank you for your help and for sharing your great work!

zt20001126 commented 1 month ago

The download link for example_seqs.fasta is not working.

zhenjiagan commented 3 weeks ago

I also encountered this problem. When I run: _wget -nc -P protT5/ https://rostlab.org/~deepppi/example_seqs.fasta_, it prompts: Connecting to files.rostlab.org (files.rostlab.org)|131.159.28.73|:443... failed: Connection timed out. Retrying.