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ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Academic Free License v3.0
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can i using pretraining for some regression problems?
#107
morestart
closed
1 year ago
16
FineTuning of Model for Allosteric Site Prediction
#106
MoaazK
closed
1 year ago
4
1D amino acid sequence generation from encoder output
#105
bg-uni
closed
1 year ago
1
ProtT5 Fine-Tuning
#104
TheBil99
closed
1 year ago
3
Exception: Label encoder found an unknown label.
#103
skr3178
closed
1 year ago
2
can't set attribute
#102
skr3178
closed
1 year ago
2
can protT5 be used to generate embeddings for sequence fragments rather than full sequences?
#101
zhuzihan728
closed
1 year ago
1
Bert pretraining approach
#100
shu1273
closed
1 year ago
1
Sequence-level embeddings using ProtTrans models
#99
josephyu12
closed
1 year ago
3
Generating protein sequences
#98
gitwangxf
closed
1 year ago
4
Protein-protein interaction
#97
Moeinh77
closed
1 year ago
3
Generating embeddings in T5
#96
BrahamVictor
closed
1 year ago
2
Cross Attention Query
#95
lhallee
closed
1 year ago
9
question about prot T5 denoising objective
#93
zzk1st
closed
1 year ago
3
about the decoder of prott5 model
#92
xiebaoshu058
closed
1 year ago
4
Precomputed embedding for all huuman proteins
#91
SalvatoreRa
closed
1 year ago
3
ProtT5 vs fine-tuned ProtBERT for classification
#90
wwwhhhccc
closed
1 year ago
1
Using subnets of ProtTrans for protein understanding/classification tasks
#89
xinshao-wang
closed
1 year ago
1
Using [CLS] token for classification task?
#88
gitwangxf
closed
1 year ago
9
CNN classifier for supervised learning
#87
balvisio
closed
2 years ago
2
Fine tuning ProtBert model for language modelling task
#86
shu1273
closed
1 year ago
7
Error downloading pre-trained model (prot_t5_xl_uniref50)
#85
zengzishuo
closed
2 years ago
1
Positional Encoding in ProtBERT
#84
balvisio
closed
2 years ago
4
Model names in "Models Availability" and "Original downstream Predictions" Tables
#83
balvisio
closed
2 years ago
6
Dealing with PDB files
#82
sky-2002
closed
2 years ago
1
About prot_t5_xl_half_uniref50-enc on HuggingFace
#81
mircare
closed
2 years ago
2
Do we have pre-computed embeddings of known protein sequences available for download?
#80
johnnytam100
closed
1 year ago
14
RuntimeError: CUDA out of memory.
#79
HanselYu
closed
2 years ago
2
Error running fine tune notebooks
#78
BSharmi
closed
2 years ago
1
Cuda out of memory
#77
CNwangbin
closed
2 years ago
4
what mean the word 'SS3' and 'MS' in "ProtBert_BFD_FineTuning_MS.ipynb" or "ProtBert_BFD_FineTuning_SS3.ipynb"?
#76
zhangzhenhuajack
closed
2 years ago
1
BFD_FineTune_Loc attributeError
#75
wvdon
closed
2 years ago
1
About 2-chars characters in DeepLoc's protein strings
#74
ratthachat
closed
2 years ago
17
U class in "membrane" vs. "water soluble" dataset
#73
ratthachat
closed
2 years ago
1
Embedding to sequence?
#72
fcharih
closed
2 years ago
2
About predictprotein.org
#71
Xinxinatg
closed
2 years ago
3
Long Protein sequences embeddings
#70
rominaappierdo
closed
2 years ago
4
2D t-SNE projections of single amino acids in figure 3A
#69
wuwo007
closed
2 years ago
1
ProtElectra Tokenizer
#68
CeciLyu
closed
2 years ago
1
Details on Rostlab/prot_t5_base_mt_uniref50
#67
ArcaneEmergence
closed
2 years ago
1
How to train a new model using my own sequence data? train.py missing?
#66
usccolumbia
closed
2 years ago
1
protein sequence embedding for t-sne
#65
ddongminstar
closed
2 years ago
1
Checkpoints of pre-trained models
#64
pzhang84
closed
2 years ago
2
Fine-tuning on multiple GPUs in parralle mode
#63
denysm
closed
1 year ago
2
Some questions of protBERT
#62
a77564399
closed
2 years ago
1
Code for Re-train ProtBert Model
#61
pzhang84
closed
2 years ago
1
got an unexpected keyword argument 'gradient_checkpointing'
#60
yuyanislearning
closed
2 years ago
2
About the example:ProtT5-XL-UniRef50.ipynb
#59
Lyn-666
closed
2 years ago
1
cuda OOM when using feature extraction
#58
victorconan
closed
2 years ago
2
ProtBertBFD Embeddings
#57
biodegradable24
closed
3 years ago
3
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