The following are characteristics of the device / measurement schema, and initially we plan to add as attributes to NIRSDevice:
nirs_mode (continuous wave, frequency, time domain, etc) [required]
frequency (for frequency domain) [optional]
time_delay (for time domain) [optional]
time_delay_width (for time domain) [optional]
correlation_time_delay (for DCS) [optional]
correlation_time_delay_width (for DCS) [optional]
comment: str (for anything else useful, such as additional parameter values) [optional]
The following are chararacteristics of individual channels, so we plan to add as columns to NIRSChannelsTable:
change wavelength -> source_wavelength [required]
emission_wavelength [optional]
source_power [optional]
detector_gain [optional]
Note: this issue is intended to just create a place for this data into the extension, and we should expect some reorganization in the future, especially after getting feedback from the NWB team.
The original hdmf PR has been replaced by this one: https://github.com/hdmf-dev/hdmf/pull/536, which has been merged-in. We're just waiting on the next releas for hdmf (and maybe pynwb)
Based on the SNIRF data format documentation here: https://docs.google.com/document/d/1kLQnFNSXsCAcUNcCPtyTerSwatCOnLcX4fAaZsidCbI/edit
The following are characteristics of the device / measurement schema, and initially we plan to add as attributes to NIRSDevice:
The following are chararacteristics of individual channels, so we plan to add as columns to NIRSChannelsTable:
Note: this issue is intended to just create a place for this data into the extension, and we should expect some reorganization in the future, especially after getting feedback from the NWB team.