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agencyenterprise / neural-data-simulator

Electrophysiology data simulator for developing brain-computer interfaces
https://agencyenterprise.github.io/neural-data-simulator/
Apache License 2.0
69 stars 7 forks source link

`make lint` `pyright` errors on Python 3.11 #37

Closed charlesbmi closed 11 months ago

charlesbmi commented 11 months ago

Describe the bug

On the main branch, make lint currently errors out on pyright step.

Steps to reproduce

Replace this text with a code snippet or minimal working example to replicate your problem.

Run make lint

Include a description of your setup including:

Expected results

make lint succeeds.

Actual results

❯ make lint
poetry run black .
All done! ✨ 🍰 ✨
73 files left unchanged.
poetry run isort .
Skipped 1 files
poetry run flake8 .
poetry run pyright
/Users/charles/Development/nds/src/neural_data_simulator/ephys_generator.py
  /Users/charles/Development/nds/src/neural_data_simulator/ephys_generator.py:233:41 - error: Argument of type "float" cannot be assigned to parameter "fmin" of type "int" in function "powerlaw_psd_gaussian"
    "float" is incompatible with "int" (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/neural_data_simulator/filters.py
  /Users/charles/Development/nds/src/neural_data_simulator/filters.py:67:36 - error: "gaussian" is not a known member of module "scipy.signal" (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/neural_data_simulator/inputs.py
  /Users/charles/Development/nds/src/neural_data_simulator/inputs.py:163:46 - error: Dataclass __post_init__ method parameter type mismatch for field "lsl_stream_info"
    Type "stream_info | None" cannot be assigned to type "stream_info"
      Type "None" cannot be assigned to type "stream_info" (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/neural_data_simulator/inputs.py:223:16 - error: Argument of type "list[StreamInfo] | None" cannot be assigned to parameter "__obj" of type "Sized" in function "len"
    Type "list[StreamInfo] | None" cannot be assigned to type "Sized"
      "__len__" is not present (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/neural_data_simulator/inputs.py:224:31 - error: Object of type "None" is not subscriptable (reportOptionalSubscript)
/Users/charles/Development/nds/src/neural_data_simulator/outputs.py
  /Users/charles/Development/nds/src/neural_data_simulator/outputs.py:67:42 - error: Index 1 is out of range for type _Shape (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/neural_data_simulator/outputs.py:427:28 - error: Argument of type "str" cannot be assigned to parameter "channel_format" of type "int" in function "__init__"
    "str" is incompatible with "int" (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/tasks/center_out_reach/metrics.py
  /Users/charles/Development/nds/src/tasks/center_out_reach/metrics.py:273:13 - error: Argument of type "float | Unknown | NDArray[float64] | floating[Any]" cannot be assigned to parameter "r2" of type "ndarray[Unknown, Unknown]" in function "_plot_velocities"
    Type "float | Unknown | NDArray[float64] | floating[Any]" cannot be assigned to type "ndarray[Unknown, Unknown]"
      "float" is incompatible with "ndarray[Unknown, Unknown]" (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/tasks/center_out_reach/metrics.py:282:13 - error: Argument of type "float | Unknown | NDArray[float64] | floating[Any]" cannot be assigned to parameter "r2" of type "ndarray[Unknown, Unknown]" in function "_plot_velocities"
    Type "float | Unknown | NDArray[float64] | floating[Any]" cannot be assigned to type "ndarray[Unknown, Unknown]"
      "float" is incompatible with "ndarray[Unknown, Unknown]" (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/tasks/center_out_reach/scalers.py
  /Users/charles/Development/nds/src/tasks/center_out_reach/scalers.py:114:58 - error: Argument of type "Unknown | NDArray[float64] | Any | NDArray[Unknown] | tuple[Unknown, Unknown | NDArray[float64] | Any | NDArray[Unknown]]" cannot be assigned to parameter "X" of type "ndarray[Unknown, Unknown]" in function "pixels_to_millimeters"
    Type "Unknown | NDArray[float64] | Any | NDArray[Unknown] | tuple[Unknown, Unknown | NDArray[float64] | Any | NDArray[Unknown]]" cannot be assigned to type "ndarray[Unknown, Unknown]"
      "tuple[Unknown, Unknown | NDArray[float64] | Any | NDArray[Unknown]]" is incompatible with "ndarray[Unknown, Unknown]" (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/tasks/center_out_reach/screen_info.py
  /Users/charles/Development/nds/src/tasks/center_out_reach/screen_info.py:24:24 - error: "NSDeviceSize" is unknown import symbol (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/tasks/center_out_reach/screen_info.py:25:24 - error: "NSScreen" is unknown import symbol (reportGeneralTypeIssues)
  /Users/charles/Development/nds/src/tasks/center_out_reach/screen_info.py:26:24 - error: "CGDisplayScreenSize" is unknown import symbol (reportGeneralTypeIssues)
/Users/charles/Development/nds/src/tasks/center_out_reach/task_window.py
  /Users/charles/Development/nds/src/tasks/center_out_reach/task_window.py:255:32 - error: Cannot assign member "position" for type "Sprite"
    "tuple[Unknown, ...]" is incompatible with "Tuple[int, int]"
      Tuple size mismatch; expected 2 but received indeterminate (reportGeneralTypeIssues)
14 errors, 0 warnings, 0 informations
make: *** [lint] Error 1