agordon / fastx_toolkit

FASTA/FASTQ pre-processing programs
Other
167 stars 60 forks source link

Release 0.0.14 has a broken link #4

Closed slowkow closed 10 years ago

slowkow commented 10 years ago

The link to download release 0.0.14 is broken:

https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2

Could you please provide binaries for Linux x86_64?

I cloned your repo, and successfully created a configure file, but it won't complete successfully quite yet. Could you provide any tips? Thanks!

git clone https://github.com/agordon/fastx_toolkit.git
cd fastx_toolkit/
libtoolize --force
aclocal
autoheader 
automake --force-missing --add-missing
vim configure.ac 
automake --force-missing --add-missing
autoconf
autoreconf
automake --force-missing --add-missing
./configure --prefix=/home/unix/slowikow/.local/

./configure: line 14512: syntax error near unexpected token `GTEXTUTILS,gtextutils'
./configure: line 14512: `PKG_CHECK_MODULES(GTEXTUTILS,gtextutils)'
agordon commented 10 years ago

Hello,

First, the link for the tarball works fine - wget or curl download the file without a problem.

Second, if you use the code directly from the git repository, there's a reconf script which should take care of bootstrapping and creating the configure script. The PKG_CHECK_MODULES error is related to missing pkg-config package on your computer, for example: http://www.coffeecode.net/archives/208-PKG_CHECK_MODULES-syntax-error-near-unexpected-token-DEPS,.html .

Hope this helps, -gordon

ClaireMarchal commented 8 years ago

Hi!

I've encountered the same error when trying to install this toolkit on a new computer. I've fixed this issue by copying the pkg.m4 file (for me in /usr/local/share/aclocal) in the cloned fastx_toolkit repository, and then, doing again the installation since the beginning.

Hope this could be helpfull.

Claire

pseudogene commented 8 years ago

Hi,

I got the same issue on a new distribution of Ubuntu. Make sure you have all necessary packages installed, specially pkg-config.

sudo apt-get install libtool automake autoconf pkg-config
git clone https://github.com/agordon/fastx_toolkit.git
cd fastx_toolkit
./reconf
./configure
make

Michaël