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agroportal / project-management

Repository used to consolidate documentation about the AgroPortal project and track content related issues.
http://agroportal.lirmm.fr
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GAO metrics error #354

Closed syphax-bouazzouni closed 1 year ago

syphax-bouazzouni commented 1 year ago

Error

I, [2023-01-20T14:03:14.158036 #24004]  INFO -- : ["Starting to process http://data.bioontology.org/ontologies/GAO/submissions/4"]
I, [2023-01-20T14:03:14.194816 #24004]  INFO -- : ["Starting to process GAO/submissions/4"]
I, [2023-01-20T14:03:14.195796 #24004]  INFO -- : ["metrics_for_submission start"]
I, [2023-01-20T14:03:14.532526 #24004]  INFO -- : ["Metrics groupby_children retrieved 6 in 0.274953865 sec."]
I, [2023-01-20T14:03:14.533368 #24004]  INFO -- : ["Metrics count_classes retrieved 65 in 0.000675853 sec."]
I, [2023-01-20T14:03:14.612511 #24004]  INFO -- : ["Metrics count cls with def 17 in 0.0790011 sec."]
I, [2023-01-20T14:03:14.612569 #24004]  INFO -- : ["Class metrics finished in 0.416719992 sec."]
I, [2023-01-20T14:03:14.612595 #24004]  INFO -- : ["class_metrics finished"]
I, [2023-01-20T14:03:14.613108 #24004]  INFO -- : ["individuals finished"]
I, [2023-01-20T14:03:14.613329 #24004]  INFO -- : ["properties finished"]
I, [2023-01-20T14:03:14.613676 #24004]  INFO -- : ["generation of metrics file finished"]
E, [2023-01-20T14:03:14.677275 #24004] ERROR -- : ["SPARQL::Client::MalformedQuery: error: raptor_new_uri_relative_to_base failed at line 1 of operation 0\nerror: syntax error, unexpected $end, expecting '}' at line 9 of operation ]
syphax-bouazzouni commented 1 year ago

In Stageportal we don't have the issue

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syphax-bouazzouni commented 1 year ago

Run again bin/ncbo_ontology_process -o GAO fixed the issue

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