Remove a few ontologies from AgroPortal

agroportal / project-management

Repository used to consolidate documentation about the AgroPortal project and track content related issues.

http://agroportal.lirmm.fr

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Remove a few ontologies from AgroPortal #435

Open jonquet opened 9 months ago

jonquet commented 9 months ago

Form multiple reasons we are considering removing some ressources in AgroPortal. Mostly because they are already available in another portal in the Alliance (in our case BioPortal mostly) and because the communities are not necessarily coming to AgroPortal to browse/use these ontologies.

These include:

[x] GO
[x] PR
[x] ITIS
[x] CL
[x] EFO
[x] SO
[ ] SIO

At least, we should adopt a strategy to keep only a few version of these ontlogies.

NB: PR is not plugin to any pullURL hence the version is super old.

jonquet commented 9 months ago

Done.

For GO, kept only one version per year.
For CL, kept only one version per year.
For SO, kept only one version per year.
For EFO, kept only one version per year. Problem removing 18,19,20,21,22,23, 40,41
For PR, I just add a pullURL so the ontology will be maintainted updated. Willa dopt the same policy (one per year) later. The new submission shall remove the huge mappings file.
For ITIS: https://agroportal.lirmm.fr/ontologies/ITIS @syphax-bouazzouni can you remove it with the script ? (the UI does not work ...)

syphax-bouazzouni commented 6 months ago

Any new on this @jonquet ?

jonquet commented 6 months ago

We shll keep this move when the discussion about the canonical ontologies with the OntoPortal Alliance will occur.

syphax-bouazzouni commented 3 months ago

@jonquet reminder.