AgroPortal Docker

[syphax-bouazzouni]

Related to https://github.com/ontoportal/ontoportal-project/issues/7

Goal

Run an ontoportal instance using docker

Requirments

• [x] Have a CI to build the API docker image on each release (https://github.com/ontoportal-lirmm/ontologies_api/pull/58)
• [x] Have a CI to build the UI docker image on each release (https://github.com/ontoportal-lirmm/bioportal_web_ui/pull/384)
• [x] Have a CI to build the CRON docker image on each release (https://github.com/ontoportal-lirmm/ncbo_cron/commit/e15e2180a0908db94dab2f284845edc60dfdce78)
• [x] Have docker-compose to run the API (https://github.com/ontoportal-lirmm/ontologies_api/pull/59)
• [x] Have docker-compose to run the UI (https://github.com/ontoportal-lirmm/bioportal_web_ui/pull/384)
• [x] Have docker-compose to run the CRON (same as the API)
• [x] Have a script/CLI to fetch and run the docker-compose together, running an Ontoportal instance, in API mode or UI mode. (https://github.com/ontoportal/ontoportal_docker/pull/7)
• [ ] Have a UI to bootstrap an ontoportal instance using Docker

[jonquet]

For this last point (UI) do you think about an independant small web app (ruby I assume) that would be deployed and stable somewhere and would be use to deploy Test/Stage/Agro ?

[imadbourouche]

For this last point (UI) do you think about an independant small web app (ruby I assume) that would be deployed and stable somewhere and would be use to deploy Test/Stage/Agro ?

A small simple web app using html and js where we can host it on github pages and will be used to:

• Choose docker version : BioPortal or AgroPortal (maybe will add Test/Stage/Master configuration)
• Select ontologies to import at start (example as we did for STY in our tests)
• Choose the mode run: UI or API, or Both
• Deploy the instance using this interface

And behind the scene it calls the ontoportal script that will do all this

[syphax-bouazzouni]

Close this iteration here, will reopen a new issue for the followup.