search

ahodelin / Bachmann_Archive

Bioinformatik und Systembiologie SS 2021 Gruppenarbeit
Creative Commons Zero v1.0 Universal
6 stars 1 forks source link

Pick software tool(s) for simulation #11

Closed jessvasseur closed 3 years ago

jessvasseur commented 3 years ago
jessvasseur commented 3 years ago

http://sed-ml.org/showcase.html

jessvasseur commented 3 years ago

https://tellurium.readthedocs.io/en/latest/notebooks.html#working-with-sed-ml http://sysbioapps.spdns.org/SED-ML_Web_Tools

fphans commented 3 years ago

both tools added to the toolbox

jessvasseur commented 3 years ago

(1) create default simulation in SED-ML WebTools based on SBML model, then use COPASI to reproduce specific figures (2) reproduce all simulation experiments using Tellurium