Closed ahodelin closed 3 years ago
initial SED-ML files and results were added to github yesterday - do we still need to upload them on GoogleDrive?
SED-ML files were generated using https://github.com/ahodelin/Bachmann_Archive/blob/main/model/Bachmann2011.xml. If this file is renamed we need to update the SED-ML files and the underlying tellurium scripts...
do we really need the naming convention? I think our experiment and results files are clearly named.. maybe to discuss later today.
That is because wi have three different models in our repository and we need to know which were used for the experiments and results.
all experiments and results were created using this model - the one chosen by Group 2. The SED-ML files contain a link to this model and I have included a txt file in each results folder with a short description regarding which model, which SED-ML file, which tool was used.
In my opinion all other model files could be deleted or put in a subfolder (other models) to avoid any confusion
Ok, thanks for the info
the link to the COMBINE archive above is not working for me - any idea why?
Sorry, the COMBINE Web is not too intuitive, and I have posted the link without to share, here the shared link:
https://cat.bio.informatik.uni-rostock.de/rest/share/6b507398-c103-4b92-9c90-d6b105ff1372
There is a link with the name ::ba, this is our archive.
would recommend pushing all "unused" model files to a subfolder from "models". baybe itbecomes more clear on what code we simulate and what parts are only mentioned for integrity
respective conventions: there is a DCMI terminology in the sbml file (e.g. dcterms:W3CDTF describing the set of dates and times constructed according to the W3C Date and Time Formats Specification.) some details are already in the wiki
@ahodelin could you update the COMBINE archive with the added / modified files for experiments and results? thank you :)
Hello,
hier is our COMBINE archive in testversion: id: 2e2f8798-aec7-40a1-b49b-62b3ec80fac2 Here the link again: https://cat.bio.informatik.uni-rostock.de/rest/share/6b507398-c103-4b92-9c90-d6b105ff1372
I need some info:
Name convention for files in eperiment/result: nameOfSBMLFromSource_yyyymmdd.some_extension
Some examples
Thanks