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ahodelin / Bachmann_Archive

Bioinformatik und Systembiologie SS 2021 Gruppenarbeit
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Repro_Figure3 #45

Closed ohoelske closed 3 years ago

ohoelske commented 3 years ago

Repro Figure 3 using Tellurium

Not solved issues:

  1. Axis units not in accordance to paper
  2. tSTAT5 not defined in model
  3. Export as SED-ML
jessvasseur commented 3 years ago

SED-ML file was generated and exported in new notebook (Link)

jessvasseur commented 3 years ago

axis units are a general issue with the plots - I think we would need to implement some kind of conversion factor (probably specified in the Supplementary Information)

jessvasseur commented 3 years ago

further discussions regarding the figures in #14