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ahwagner / vicckb

python module for querying the vicc knowledgebase integration datastore
MIT License
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Statistics methods #35

Closed ahwagner closed 4 years ago

ahwagner commented 4 years ago

The Methods must include a statistics section where you describe the statistical tests used. The supplied checklist provides details of which statistics need to be in the Figure legends, and which assumptions and analytical procedures need to be supplied in the Methods. For all statistics (including error bars), provide the EXACT numbers used to calculate the statistics (reporting individual values rather than a range if n varied among experiments) AND define type of replicates (e.g., cell cultures, technical replicates). Please avoid use of the ambiguous term “biological replicates”; instead state what constituted the replicates (e.g., cell cultures, independent experiments, etc.). For all representative results, indicate number of times experiments were repeated, number of images collected, etc. Indicate statistical tests used, whether the test was one- or two-tailed, exact values (NOT for example: <0.05) for both significant and non-significant P values where relevant, F values and degrees of freedom for all ANOVAs, and t-values and degrees of freedom for t-tests.

ahwagner commented 4 years ago

Relevant detail on statistical tests from Nat Genetics Reporting Summary.

ahwagner commented 4 years ago

We have denoted all tests as being two-sided. We have replaced p-values with exact calculated values.