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ai-med / QuickNATv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
MIT License
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freesurfer #8

Open ymli39 opened 5 years ago

ymli39 commented 5 years ago

Hi, I saw you mentioned in step 5 (Enter the path and name of the MRI volume, use freesurfer to do it using the command: 'mri-convert --conform InputVol OutputVol'). Is this part of the pre-processing step? If I have my own data, do I need to run freesurfer or I can directly test my data?

Thanks,

ShaodeYuOutlook commented 5 years ago

This step seems to convert an original volume image in to an image of iso-tropic resolution of [256 256 256].

abhi4ssj commented 4 years ago

Hi,

There is also some global contrast enhancement made during this step. Unfortunately this is not very clear in FreeSurfer documentation.

https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert