Open KatarinaYuan opened 4 weeks ago
Hi, thanks for concerning our work. We will release an accelerated PdbQuantizer with multi-thread parallel processing next month.
Accelerated version speed:
Protein Name (Uniprot_ID) | Length (Local structures) | Splitting to local structure | Encoding |
---|---|---|---|
CCDB_ECOLI_Adkar_2012 | 101 | 0.29s | 4.43s |
ESTA_BACSU_Nutschel_2020 | 212 | 0.67s | 4.27s |
PTEN_HUMAN_Matreyek_2021 | 403 | 1.06s | 4.45s |
ENV_HV1B9_DuenasDecamp_2016 | 853 | 3.24s | 5.63s |
Thanks! Looking forward to the release!
Hi Teams, Thanks for the great work. Wondering how long it takes to process a protein of length 400 for your pre-trained
PdbQuantizer
? On my machine, somehow it's super slow. Just trying to figure out the reason.Thanks for help!